Actually, both the "Nobody knows but Jesus" and "Nobody knows my sorrow" versions are traditional, long-standing versions (and I can't find any clear indication of which is the "original" on the web.) Given the origin of the song, its quite likely lots of variations existed before it was written down.
Salon's version:
Nobody knows the trouble I’ve seen Nobody knows my sorrow Nobody knows the trouble I’ve seen Glory Hallelujah
The original: Nobody knows the trouble I've seen Nobody knows but Jesus Nobody knows the trouble I've seen Glory hallelujah!